1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaatttttttcttactaaagaacattaatttccagttcttgtagtaacttgaattgcggttttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACATTGGCTAAAATGCTTCTGAATTGGGCTGTAAAAGATGGTTGGAAACCGA
species | Arabidopsis thaliana |
transcript | AT5G39930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAG GAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACAEST: gi|116437653|gb|EG480245.1|EG480245
genomic: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAGgtaaattttt ... ttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACA
EST: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAG GAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACAEST: gi|116437665|gb|EG480257.1|EG480257
genomic: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAGgtaaattttt ... ttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACA
EST: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAG GAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACAEST: gi|116437661|gb|EG480253.1|EG480253
genomic: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAGgtaaattttt ... ttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACA
EST: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAG GAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACAEST: gi|116437666|gb|EG480258.1|EG480258
genomic: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAGgtaaattttt ... ttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACA
EST: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAG GAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACAEST: gi|116437669|gb|EG480261.1|EG480261
genomic: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAGgtaaattttt ... ttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACA
EST: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAG GAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACAEST: gi|116437664|gb|EG480256.1|EG480256
genomic: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAGgtaaattttt ... ttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACA
EST: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAG GAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACAEST: gi|116437658|gb|EG480250.1|EG480250
genomic: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAGgtaaattttt ... ttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACA
EST: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAG GAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACAEST: gi|116437642|gb|EG480234.1|EG480234
genomic: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAGgtaaattttt ... ttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACA
EST: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAG GAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACA
genomic: TACAAAGACATCGTGTTACTTCCTCAACAAGAGATTCTGCATCTTCACAGgtaaattttt ... ttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACA
aaagaacattaatttccagttcttgtagtaacttgaattgcggttttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACATTGGCTAAAATGCTTCTGAATTGGGCTGTAAAAGATGGTTGGAAACCGA
tagtaac putative branch site (score: 1)
ttttgttt putative PPT
acattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttttttcttactaaagaacattaatttccagttcttgtagtaacttgaattgcggttttgtttgaagGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGGGAAGAGCACATTGGCTAAAATGCTTCTGAATTGGGCTGTAAAAGATGGTTGGAAACCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG