1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgcgttcatactctccttccctcgcttttatcttatactagtttgcattttttacaaaatcatgatttctttctttgtaataacagTTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAG
species | Arabidopsis thaliana |
transcript | AT1G80830.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAA TTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCTEST: gi|116476121|gb|EG518713.1|EG518713
genomic: TTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAAgtgcgttcat ... gtaataacagTTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCT
EST: TTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAA TTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCTEST: gi|86053213|gb|DR348970.1|DR348970
genomic: TTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAAgtgcgttcat ... gtaataacagTTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCT
EST: TTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAA TTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCT
genomic: TTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAAgtgcgttcat ... gtaataacagTTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCT
cttatactagtttgcattttttacaaaatcatgatttctttctttgtaataacagTTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAG
tttctttctttgt CT-rich tract
attttttacaaaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgttcatactctccttccctcgcttttatcttatactagtttgcattttttacaaaatcatgatttctttctttgtaataacagTTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT