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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattcggatcttaaaatagttgactatttttattttctacaagaaaggattacaattttgagattttattttaatgtttgttgtcagCTTTGTCTCTGGATCCATTGATTGGGGCAATAGCAGCAGGAAATACCGTGCTTCTCAAGTCATCTGAACTAAGCCCTAACGCATCTGCCTTCCTTGCCAA

Basic information

species Arabidopsis thaliana
transcript AT4G36250.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124729753|gb|EH821155.1|EH821155
EST:     GGAACCCTATGGGACGGTTCTTGTTCTGTCTAGCTGGAATTTTCCTATAT                         CTTTGTCTCTGGATCCATTGATTGGGGC
genomic: GGAACCCTATGGGACGGTTCTTGTTCTGTCTAGCTGGAATTTTCCTATATgtaagattcg ... ttgttgtcagCTTTGTCTCTGGATCCATTGATTGGGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctacaagaaaggattacaattttgagattttattttaatgtttgttgtcagCTTTGTCTCTGGATCCATTGATTGGGGCAATAGCAGCAGGAAATACCGTGCTTCTCAAGTCATCTGAACTAAGCCCTAACGCATCTGCCTTCCTTGCCAA
                                    ttttaat  putative branch site (score: 3)
                attacaattttgagat  TA-rich tract