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gtaagcacattactctctctttttttttaataatctgtaaagatttgagatgattcattcttgtttcttcttcctgtgttctgcagTTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAA
species | Arabidopsis thaliana |
transcript | AT1G80830.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTAGGCCCCGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACT TTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAAEST: gi|125206150|gb|EL221104.1|EL221104
genomic: CTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACTgtaagcacat ... tgttctgcagTTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAA
EST: CTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACT TTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTEST: gi|116476121|gb|EG518713.1|EG518713
genomic: CTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACTgtaagcacat ... tgttctgcagTTGAGACTGATCTGCAAGCTGGAGCACACTACAAGT
EST: CTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACT TTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAAEST: gi|86053213|gb|DR348970.1|DR348970
genomic: CTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACTgtaagcacat ... tgttctgcagTTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAA
EST: CTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACT TTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAA
genomic: CTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACTgtaagcacat ... tgttctgcagTTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAA
aatctgtaaagatttgagatgattcattcttgtttcttcttcctgtgttctgcagTTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAA
ttcattcttgtttctt CT-rich tract
taaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacattactctctctttttttttaataatctgtaaagatttgagatgattcattcttgtttcttcttcctgtgttctgcagTTGAGACTGATCTGCAAGCTGGAGCACACTACAAGTATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA