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gttataacaacataagaacatccatgcttattcagctcttgatctacgtaagttgcttaaaaagctgtatttatttattgcagGTGCTGGCTAACGATAATGTGAAATTTGGATACAATGCTGCAACCGGCAAGTATGAAGACCTGATGGCTGCAGGCATCATCGACCCGACAAAG
species | Arabidopsis thaliana |
transcript | AT3G13470.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATTGATAGCTAAGAATGCNTGGTGTTAATGGAAGTGTTGTCAGCGAGAAG GTGCTGGCTAACGATAATGTGAAATTTGGATACAATGCTGCAACCGGCAAGEST: gi|164117296|gb|EL983008.1|EL983008
genomic: ATTGATAGCTAAGAATGC-TGGTGTTAATGGAAGTGTTGTCAGCGAGAAGgttataacaa ... tttattgcagGTGCTGGCTAACGATAATGTGAAATTTGGATACAATGCTGCAACCGGCAAG
EST: AATTGATAGCTAAGAATGCTGGTGTTAATGGAAGTGTTGTCAGCGAGAAG GTGCTGGCTAACGATAATGTGAAATTTGGATACAATGCEST: gi|125208624|gb|EL223578.1|EL223578
genomic: AATTGATAGCTAAGAATGCTGGTGTTAATGGAAGTGTTGTCAGCGAGAAGgttataacaa ... tttattgcagGTGCTGGCTAACGATAATGTGAAATTTGGATACAATGC
EST: AATTGATAGCTAAGAATGCTGGTGTTAATGGAAGTGTTGTCAGCGAGAAG GTGCTGGCTAACGATAAEST: gi|124909331|gb|EH983411.1|EH983411
genomic: AATTGATAGCTAAGAATGCTGGTGTTAATGGAAGTGTTGTCAGCGAGAAGgttataacaa ... tttattgcagGTGCTGGCTAACGATAA
EST: ATTGATAGCTAAGAATGTCTGGTGTTAATGGAAGTGTTGTCAGCGAGAAG GTGCTGGCTAACG
genomic: ATTGATAGCTAAGAATG-CTGGTGTTAATGGAAGTGTTGTCAGCGAGAAGgttataacaa ... tttattgcagGTGCTGGCTAACG
tattcagctcttgatctacgtaagttgcttaaaaagctgtatttatttattgcagGTGCTGGCTAACGATAATGTGAAATTTGGATACAATGCTGCAACCGGCAAGTATGAAGACCTGATGGCTGCAGGCATCATCGACCCGACAAAG
tcttgat putative branch site (score: 4)
tttattt putative PPT
ttaaaaagctgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttataacaacataagaacatccatgcttattcagctcttgatctacgtaagttgcttaaaaagctgtatttatttattgcagGTGCTGGCTAACGATAATGTGAAATTTGGATACAATGCTGCAACCGGCAAGTATGAAGACCTGATGGCTGCAGGCATCATCGACCCGACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG