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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaataatcaaacacattttcattcaaagatgagatactttgatcatctctgacttcatatatatgttccctttcttcacagATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATATACTATCTAGTAAGCAGTTTCATCAAACTGCTTATCCACAGTCATATGA

Basic information

species Arabidopsis thaliana
transcript AT1G80830.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125262677|gb|EL276762.1|EL276762
EST:     AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCG                         ATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCAT
genomic: AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCGgtatgtaata ... ttcttcacagATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCAT
EST: gi|164088780|gb|ES086309.1|ES086309
EST:     AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCG                         ATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAA
genomic: AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCGgtatgtaata ... ttcttcacagATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAA
EST: gi|86085916|gb|DR381675.1|DR381675
EST:     AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCG                         ATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATA
genomic: AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCGgtatgtaata ... ttcttcacagATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATA
EST: gi|125225061|gb|EL239146.1|EL239146
EST:     CAAAACCAAAGATGGGTTCACATGTCAACCCAATGGCG                         ATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATA
genomic: CAAAACC-AAGATGGGTTCACATGTCAACCCAATGGCGgtatgtaata ... ttcttcacagATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgagatactttgatcatctctgacttcatatatatgttccctttcttcacagATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATATACTATCTAGTAAGCAGTTTCATCAAACTGCTTATCCACAGTCATATGA
                    ctctgac  putative branch site (score: 3)
                                   tatgttccctttcttc  putative PPT
                           ttcatatatatgtt  TA-rich tract