Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataaaagtttccttctttagacttttgattctcagacaagcattattcttttagcttttgataatggttttgtgctgatattaaagcttttctctttcagGAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAG

Basic information

species Arabidopsis thaliana
transcript AT4G18710.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86056759|gb|DR352516.1|DR352516
EST:     ATCGCCATGGCTGATGATAAG                         GAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATT
genomic: ATCGCCATGGCTGATGATAAGgtaaagctgc ... tctctttcagGAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATT
EST: gi|86056751|gb|DR352508.1|DR352508
EST:     ATCGCCATGGCTGATGATAAG                         GAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATT
genomic: ATCGCCATGGCTGATGATAAGgtaaagctgc ... tctctttcagGAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATT
EST: gi|124819338|gb|EH904204.1|EH904204
EST:     TGGCTGATGATAAG                         GAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATT
genomic: TGGCTGATGATAAGgtaaagctgc ... tctctttcagGAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttagcttttgataatggttttgtgctgatattaaagcttttctctttcagGAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAG
                           tgctgat  putative branch site (score: 3)
                                         cttttctctttc  putative PPT
                                atattaaagctttt  TA-rich tract