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...tcgttttcagagtcaacatatcagaagactaaacaaaaaacacagagaatcttgattcaaaaaatgataatgagtttgttttgaatcatcaactttgcagAAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACT
species | Arabidopsis thaliana |
transcript | AT1G80830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCCACTCATCGAGAACTCTGATTCTAATCAGATTATTGTCTCTGAG AAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCCGGTTTTCTTGTTEST: gi|116476121|gb|EG518713.1|EG518713
genomic: ATTCTCCACTCATCGAGAACTCTGATTCTAATCAGATTATTGTCTCTGAGgtcatttctt ... aactttgcagAAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTT
EST: ATTCTCCACTCATCGAGAACTCTGATTCTAATCAGATTATTGTCTCTGAG AAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTTEST: gi|86053213|gb|DR348970.1|DR348970
genomic: ATTCTCCACTCATCGAGAACTCTGATTCTAATCAGATTATTGTCTCTGAGgtcatttctt ... aactttgcagAAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTT
EST: ATTCTCCACTCATCGAGAACTCTGATTCTAATCAGATTATTGTCTCTGAG AAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTT
genomic: ATTCTCCACTCATCGAGAACTCTGATTCTAATCAGATTATTGTCTCTGAGgtcatttctt ... aactttgcagAAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTT
agaatcttgattcaaaaaatgataatgagtttgttttgaatcatcaactttgcagAAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACT
tcttgat putative branch site (score: 4)
attcaaaaaatgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgttttcagagtcaacatatcagaagactaaacaaaaaacacagagaatcttgattcaaaaaatgataatgagtttgttttgaatcatcaactttgcagAAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACT
- - - - - - -caacata
- - - - - - - - - - - - - gactaaa
- - - - - - - - - - - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - - - - - cagagaa