1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttcacattctgtttttgggtccattcattggatttcgagccattttgtctgcgtgtgtagtgcgcttaccgctttggcgtgcttgttattattgttgattatatgtcgttcgcatcatgtagGATGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAG
species | Zea mays |
transcript | GRMZM5G897073_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATGGTCAGAGAGGGTCAAGTTGGTGGACTTGCACCCCACGGGAGGCATG GATGTTGAGCCTGTACTTCGAGGAGTGCCTGCATCCGGGATTATCACACAEST: gi|60345564|gb|DN212537.1|DN212537
genomic: AATGGTCAGAGAGGGTCAAGTTGGTGGACTTGCACCCCACGG-AGGCATGgtaagttcac ... catcatgtagGATGTTGAGCCTGTACT-CGAGGAGTGCCTGCATCCGGGATTATCACACA
EST: GTGGACTTGCACCCCACGGAGGCATG GATGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAEST: gi|211423204|gb|FL142523.1|FL142523
genomic: GTGGACTTGCACCCCACGGAGGCATGgtaagttcac ... catcatgtagGATGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACA
EST: CAATGGTCAGAGAGGGTCAAGTTGGTGGACTTGCACCCCACGGAGGCATG GATGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAEST: gi|71446945|gb|DR827995.1|DR827995
genomic: CAATGGTCAGAGAGGGTCAAGTTGGTGGACTTGCACCCCACGGAGGCATGgtaagttcac ... catcatgtagGATGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACA
EST: CAATGGTCAGAGAGGGTCAAGTTGGTGGACTTGCACCCCACGGAGGCATG GATGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACA
genomic: CAATGGTCAGAGAGGGTCAAGTTGGTGGACTTGCACCCCACGGAGGCATGgtaagttcac ... catcatgtagGATGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACA
accgctttggcgtgcttgttattattgttgattatatgtcgttcgcatcatgtagGATGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAG
ttgttattattgttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcacattctgtttttgggtccattcattggatttcgagccattttgtctgcgtgtgtagtgcgcttaccgctttggcgtgcttgttattattgttgattatatgtcgttcgcatcatgtagGATGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG