1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAGgtagcctgcacattttttttgtaaatgcaatgtgcatgattttataccaagcaaataagttactcaatcgctttggcttctctagaaataacatatttat...
species | Zea mays |
transcript | GRMZM5G897073_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTGAGCCTGTACTTCGAGGAGTGCCTGCATCCGGGATTATCACACACAG TCAATTTGTAGGAGAGGGGACGCCATACATCAAAGATGACTAAAGAAGAGGEST: gi|32837950|gb|CD977628.1|CD977628
genomic: GTTGAGCCTGTACT-CGAGGAGTGCCTGCATCCGGGATTATCACACACAGgtagcctgca ... ttgagtttagTCAATTTGTAGGAGAGGGGACGCCATACATCAAAGATGACTAAAGAAGAGG
EST: ACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAG TCAATTTGTAGGAGAGGGGACGCCATACATCAAAGATGACTAAAGAAGAGGEST: gi|60345564|gb|DN212537.1|DN212537
genomic: ACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAGgtagcctgca ... ttgagtttagTCAATTTGTAGGAGAGGGGACGCCATACATCAAAGATGACTAAAGAAGAGG
EST: TGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAG TCAATTTGTAGGAGAGGGGACGCCATACATCAAAGATGACTAAAGAAGAGGEST: gi|91050400|gb|EB160818.1|EB160818
genomic: TGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAGgtagcctgca ... ttgagtttagTCAATTTGTAGGAGAGGGGACGCCATACATCAAAGATGACTAAAGAAGAGG
EST: TGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAG TCAATTTGTAGGAGAGGGGACGCCATACATCAAAGATGACTAAAGAAGAGGEST: gi|32838909|gb|CD978590.1|CD978590
genomic: TGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAGgtagcctgca ... ttgagtttagTCAATTTGTAGGAGAGGGGACGCCATACATCAAAGATGACTAAAGAAGAGG
EST: ACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAG TCAATTTGTAGGAGAGGGGACGCCATACATCAAAGATGACTAAAGAAGAGGEST: gi|211423204|gb|FL142523.1|FL142523
genomic: ACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAGgtagcctgca ... ttgagtttagTCAATTTGTAGGAGAGGGGACGCCATACATCAAAGATGACTAAAGAAGAGG
EST: TGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAG TCAATTTGTAGGARAGGGGACCGCCATACATCAAAGATGACTAAAGAAGAG
genomic: TGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAGgtagcctgca ... ttgagtttagTCAATTTGTAGGAGAGGGGAC-GCCATACATCAAAGATGACTAAAGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTTGAGCCTGTACTCGAGGAGTGCCTGCATCCGGGATTATCACACACAGgtagcctgcacattttttttgtaaatgcaatgtgcatgattttataccaagcaaataagttactcaatcgctttggcttctctagaaataacatatttat
- - - - - - - - - GAGGAG