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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCATCACCTCCATCGCAACCTCTCGACGGCAGACTAGGTTTCATCCCCATCTCAACCGGCGGCAGCCTAGGGCTTCATCCCCCACCCCCAAATCCATGgtatgtggatctgaacccgcccactcccaaatctccaatccgctcgtcggcttttctcgtgcccagttcatgacatttgctcggggatttgaccaatgtcgttttctgctcgtgttcctcgcag

Basic information

species Zea mays
transcript GRMZM5G897073_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88752874|gb|DY537015.1|DY537015
EST:     ATCTCAACCGGCGGCAGCCTAGGGCTTCATCCCCCACCCCCAAATCCATG                         CCGCTCAGGTTGGAGATCAATGTGTGCCTGCTCGACCTCACTGGATCTCAG
genomic: ATCTCAACCGGCGGCAGCCTAGGGCTTCATCCCCCACCCCCAAATCCATGgtatgtggat ... ttcctcgcagCCGCTCAGGTTGGAGATCAATGTGTGCCTGCTCGACCTCACTGGATCTCAG
EST: gi|91050400|gb|EB160818.1|EB160818
EST:     ATCTCAACCGGCGGCAGCCTAGGGCTTCATCCCCCACCCCCAAATCCATG                         CCGCTCAGGTTGGAGATCAATGTGTGCCTGCTCGACCTCACTGGATCTCAG
genomic: ATCTCAACCGGCGGCAGCCTAGGGCTTCATCCCCCACCCCCAAATCCATGgtatgtggat ... ttcctcgcagCCGCTCAGGTTGGAGATCAATGTGTGCCTGCTCGACCTCACTGGATCTCAG
EST: gi|211423204|gb|FL142523.1|FL142523
EST:     ATCTCAACCGGCGGCAGCCTAGGGCTTCATCCCCCAMCCCCAAATCCATG                         CCGCTCAGGTTGGAGATCAATGTGTGCCTGCTCGACCTCACTGGATCTCAG
genomic: ATCTCAACCGGCGGCAGCCTAGGGCTTCATCCCCCACCCCCAAATCCATGgtatgtggat ... ttcctcgcagCCGCTCAGGTTGGAGATCAATGTGTGCCTGCTCGACCTCACTGGATCTCAG