1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCCTCCCCCGACCAAACACAGTCCCTGGATCCATGGGTGTCGAGGAGGAGCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccgctccattcgccgccaccgtcgtcaacaccgacgcgggcgttcaaatcatctgctcccgatcccatcccgtcatcagctcatctgtgggacctcatttctgcag
species | Zea mays |
transcript | GRMZM5G892742_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|71439824|gb|DR820874.1|DR820874
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|71438689|gb|DR819739.1|DR819739
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|148999746|gb|EE036749.2|EE036749
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|71438626|gb|DR819676.1|DR819676
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|71422780|gb|DR805839.1|DR805839
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|211426297|gb|FL054605.1|FL054605
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: GCGCGACGGCGAGGAGCAACGCCGCCTCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCTGCAGCAGCAGCAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|211426296|gb|FL054604.1|FL054604
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: CGCGACGGCGAGGAGCAACGCCGCCCCGCTCCTCTCCTCCACCCCGCCAG CYGCGGCGNACCCGCAGCAGCAGCAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|76014459|gb|DT941629.1|DT941629
genomic: CGCGACGGCGAGGAGCAACGCCGCCCC-CTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|71446190|gb|DR827240.1|DR827240
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|76285537|gb|DV025105.1|DV025105
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|101387480|gb|EB815755.1|EB815755
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTCCCCCGACCAAACACAGTCCCTGGATCCATGGGTGTCGAGGAGGAGCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccgctccattcgccgccaccgtcgtcaacaccgacgcgggcgttcaaatcatctgctcccgatcccatcccgtcatcagctcatctgtgggacctcatttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC