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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCCAACGGCGACAACGCCTATGCTTACCCGCCGTCCATTCATAGCGCCATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGgtaatttgccgccgtcggtgctctgcttctcccccaccggcctccacataatcgtcctttttcccttccgatttttcaccaactgaaggagttgttgtcttgttgaaactgctggtgctgggttgtgggttgcatctgcagaag

Basic information

species Zea mays
transcript GRMZM5G892742_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148999746|gb|EE036749.2|EE036749
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATG                         GGTTGGCGATTGTTCCTCAAGGGCCATATCCGTATGGTGGCAGTTACCAAC
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGgtaatttgcc ... tctgcagaagGGTTGGCGATTGTTCCTCAAGGGCCATATCCGTATGGTGGCAGTTACCAAC
EST: gi|71438689|gb|DR819739.1|DR819739
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGAAG                       
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAAT---Ggtaatttgcc ... tctgcaga
EST: gi|101401378|gb|EB822366.1|EB822366
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATG                         A
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGgtaatttgcc ... tctgcagaag-
EST: gi|101401378|gb|EB822366.1|EB822366
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATG                         A
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGgtaatttgcc ... tctgcagaag-
EST: gi|101401378|gb|EB822366.1|EB822366
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATG                         A
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGgtaatttgcc ... tctgcagaag-
EST: gi|22472922|gb|BU037402.1|BU037402
EST:     CCCCGTCCCCATCTCATGCCCCACCTGTCTCCCCATCCAAATGAAG                       
genomic: CCCCGTCCCCATCTCATGCCCCACC-GTCTCCCCATCCAAAT---Ggtaatttgcc ... tctgcaga
EST: gi|71438626|gb|DR819676.1|DR819676
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGAAG                       
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAAT---Ggtaatttgcc ... tctgcaga
EST: gi|87155688|gb|DY400477.1|DY400477
EST:     CCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGAAG                       
genomic: CCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAAT---Ggtaatttgcc ... tctgcaga
EST: gi|71446190|gb|DR827240.1|DR827240
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGAAG                       
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAAT---Ggtaatttgcc ... tctgcaga
EST: gi|71422780|gb|DR805839.1|DR805839
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGAAG                       
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAAT---Ggtaatttgcc ... tctgcaga
EST: gi|76285537|gb|DV025105.1|DV025105
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGAAG                       
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAAT---Ggtaatttgcc ... tctgcaga
EST: gi|101387480|gb|EB815755.1|EB815755
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATG                         A
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGgtaatttgcc ... tctgcagaag-
EST: gi|101387480|gb|EB815755.1|EB815755
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATG                         A
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGgtaatttgcc ... tctgcagaag-
EST: gi|101387480|gb|EB815755.1|EB815755
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATG                         A
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGgtaatttgcc ... tctgcagaag-
EST: gi|71439824|gb|DR820874.1|DR820874
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGAAG                       
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAAT---Ggtaatttgcc ... tctgcaga
EST: gi|76014459|gb|DT941629.1|DT941629
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATG                         A
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGgtaatttgcc ... tctgcagaag-
EST: gi|76014459|gb|DT941629.1|DT941629
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATG                         A
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGgtaatttgcc ... tctgcagaag-
EST: gi|76014459|gb|DT941629.1|DT941629
EST:     CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATG                         A
genomic: CATGCTCTCCCCGTCCCCATCTCATGCCCCACCGTCTCCCCATCCAAATGgtaatttgcc ... tctgcagaag-