Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTGCCGACTCTCGCGCTCCGCACCGGCAGCGCCGCGTGCTTCCGCTGGTTCATGGCGTTTCCCATGCTCTGCGACAAGGGCTACCTGTCCTCTCACGgtacacacctactactacacatggatttagccatttaggattacatgaaaaaaagagcatgcatgcatgataagtaaacgtgtccagtggcag

Basic information

species Zea mays
transcript GRMZM5G892627_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G892627_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g13660.1 (Oryza sativa), 5'ss of exon 1
GGCGTGCCGACTCTCGCGCTCCGCACCGGCAGCGCCGCGTGCTTCCGCTGGTTCATGGCGTTTCCCATGCTCTGCGACAAGGGCTACCTGTCCTCTCACGgtacacacctactactacacatggatttagccatttaggattacatgaaaaaaagagcatgcatgcatgataagtaaacgtgtccagtggcag
| ||||||||| || ||||| ||||||||||||||||| | |||||||   |||   |||  ||  |||||| |||||| |||||||||  || |||  |||||  |  |||   | | |       |   | |  | |  |  ||  | |         || |   ||||  |    |              
GTCGTGCCGACGCTGGCGCTGCGCACCGGCAGCGCCGCCTCCTTCCGCGTCTTCGCCGCGCATCGTATGCTCCGCGACATGGGCTACCTCCCCGCTCGAGgtacgta--tacgtgttcgcgccataatgctcctccatggctcgatctacacggacatgagctt-tgtgatctgcgcgcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14208206|gb|BG841884.1|BG841884
EST:     GTTCATGGCGTTTCCCATGCTCTGCGACAAGGGCTACCTGTCCTCTCACG                         AGTCGCAGGAGCCGGACATGCTGGTGACGGAGCTGCCGCCGTACCGCGTCC
genomic: GTTCATGGCGTTTCCCATGCTCTGCGACAAGGGCTACCTGTCCTCTCACGgtacacacct ... ccagtggcagAGTCGCAGGAGCCGGACATGCTGGTGACGGAGCTGCCGCCGTACCGCGTCC