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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacacctactactacacatggatttagccatttaggattacatgaaaaaaagagcatgcatgcatgataagtaaacgtgtccagtggcagAGTCGCAGGAGCCGGACATGCTGGTGACGGAGCTGCCGCCGTACCGCGTCCGTGACATGCCGTCCGCCAGCGGGGCCACCCTCGGGCTAATGCGGGACCT

Basic information

species Zea mays
transcript GRMZM5G892627_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14208206|gb|BG841884.1|BG841884
EST:     GTTCATGGCGTTTCCCATGCTCTGCGACAAGGGCTACCTGTCCTCTCACG                         AGTCGCAGGAGCCGGACATGCTGGTGACGGAGCTGCCGCCGTACCGCGTCC
genomic: GTTCATGGCGTTTCCCATGCTCTGCGACAAGGGCTACCTGTCCTCTCACGgtacacacct ... ccagtggcagAGTCGCAGGAGCCGGACATGCTGGTGACGGAGCTGCCGCCGTACCGCGTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattacatgaaaaaaagagcatgcatgcatgataagtaaacgtgtccagtggcagAGTCGCAGGAGCCGGACATGCTGGTGACGGAGCTGCCGCCGTACCGCGTCCGTGACATGCCGTCCGCCAGCGGGGCCACCCTCGGGCTAATGCGGGACCT
      atgaaaaaaa  TA-rich tract