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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGAGTTGGCTGCACGTTTTGTTGGAAAGCCTCCTGCTATCCTATTTGGCATGGGTTATGTTACAAAATCTGCCATCATTCCATGCCTAATTGGAAAGgtttgatcaactgcttatatgttatgtatacatttaactaaaaatgtggctaaactgaagtaatcattattatatctaaattgagggaatgattgtttattttacctttttgcaacatttcag

Basic information

species Zea mays
transcript GRMZM5G891276_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G891276_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 5
AGAGGAGTTGGCTGCACGTTTTGTTGGAAAGCCTCCTGCTATCCTATTTGGCATGGGTTATGTTACAAAATCTGCCATCATTCCATGCCTAATTGGAAAGgtttgatcaactgcttatatgtt--atgtatacatttaactaaaaatgtggctaaactgaagtaatcattattatatctaaattgagggaatgattgtttattttacctttttgcaacatttcag
 |||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| | ||||||||   |||||    | |  || |  || ||| || | |||  ||||  || ||||||| | | |   ||||  ||  |||||||      ||| |  |  |                        
GGAGGAGTTGGTTGCACGCTTTGTTGGAAAGCCTGCTGCTATCCTATTTGGCATGGGTTATGTTACAAACTCGGCCATCATTCCTTGCCTAGTAGGAAAGgtacaatcaaaacgtcaagtggttgatctatccagt-aacagaaaacatgactaaactta-gcagcaattaacatgactaaatttc----atgttattccag-----------------------

upper sequence: GRMZM5G891276_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
AGAGGAGTTGGCTGCACGTTTTGTTGGAAAGCCTCCTGCTATCCTATTTGGCATGGGTTATGTTACAAAATCTGCCATCATTCCATGCCTAATTGGAAAGgtttgatcaactgcttatat--gttatgtatacatttaactaaaaatgtggctaaactgaagtaatcattattatatctaaattgagggaatgattgtttattttacctttttgcaacatttcag
 ||||| |  | ||||   ||||||||||||||| |||| ||  | ||||||||||| ||||| ||||| ||||| ||| ||||   ||| ||||| ||||| |  |||  |  ||| ||   |  ||| || |||  || |    | ||   |  |    | | | | |  | |||  ||  || |  | |  |  || ||| |     ||  ||         
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtat--tcagttatttaaattgatattgtctatattgtacaaggcttatg-taatgcatgggcattgaattctttattcaa--tgtgaaattcttctttcattgtgatgattcacag--------