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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctgcagtgttcgtgtcgatggcagtaggatacattatcaacatgcttatatgtttacaactttttaagaacaaaaactactaaactgatccctttcatctcgtatcagCTACGACCAAGCTTCACAATGAGCTAGAGGAGTTGGCTGCACGTTTTGTTGGAAAGCCTCCTGCTATCCTATTTGGCATGGGTTATGTTACAAAATCTGC

Basic information

species Zea mays
transcript GRMZM5G891276_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G891276_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 4
gtacctgcagtgttcgtgtcgatggcagtagga-tacattatcaacatgcttatatgtttacaactttttaagaacaaaaactactaaactgatccctttcatctcgtatcagCTACGACCAAGCTTCACAATGAGCTAGAGGAGTTGGCTGCACGTTTTGTTGGAAAGCCTCCTGCTATCCTATTTGGCATGGGTTATGTTACAAAATCTGC
                           ||| |  |  ||  |   ||||||| | | |||| |    |  |    |   |   || |  ||||| ||||| || | | | |||  |||||||| ||||||| |||| | |||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || ||
---------------------------gtatgcctggatgcttgtcatgcttttttttttaaagaactgcagt--ctgtaggcaccatgctgattccttttatttggcaacagGCACGACCAAACTTCACACTGAGTTGGAGGAGTTGGTTGCACGCTTTGTTGGAAAGCCTGCTGCTATCCTATTTGGCATGGGTTATGTTACAAACTCGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacaactttttaagaacaaaaactactaaactgatccctttcatctcgtatcagCTACGACCAAGCTTCACAATGAGCTAGAGGAGTTGGCTGCACGTTTTGTTGGAAAGCCTCCTGCTATCCTATTTGGCATGGGTTATGTTACAAAATCTGC
                                   tccctttcatctcgt  CT-rich tract
       tttttaagaacaaaaa  TA-rich tract