Sequence
atgc intronic sequence ATGC exonic sequencegtaagaaccgtgcgtcgtttgtcgccgtcggtatccaccagagaccgtcctatgtcgctgatgtgctccttgtgccttgcagGCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGTTCGCTGGTCGGCGCGGCGGAGGCGGCGGCTGCTCAACGGGTAAGGGAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G887922_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g41580.1 (Oryza sativa), 3'ss of exon 3
-------------------gtaagaaccgtgcgtcgtttgtcgccgtcggtatccaccagagaccgtcct----atgtcgctgatgtgctccttgtgccttgcagGCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGTTCGCTGGTCGGCGCGGCGGAGGCGGCGGCTGCTCAACGGGTAAGGGAGA
| | ||| | ||| ||| | ||| | | | | | || ||| | || || ||| |||||| |||| ||||| || |||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||||| || | ||| | |||||||
gtgaggatcgtcgatgtcgatcgttttgattcgttgcttgccgctggtggtgttcggcgatgtgttttctgatgatggtggtggcgtcgcttttgcttgttgcagACGGAGAGGCTGCGCCGCGCGCTGGGCGAGGTGAGGCGGCGGCACTACCGGTCGCTGCTCGGCGCGGCGGAGGCGGCGGCGGCGCGCCGGATGAGGGAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcggtatccaccagagaccgtcctatgtcgctgatgtgctccttgtgccttgcagGCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGTTCGCTGGTCGGCGCGGCGGAGGCGGCGGCTGCTCAACGGGTAAGGGAGA
cgctgat putative branch site (score: 4)
ctccttgt putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagaaccgtgcgtcgtttgtcgccgtcggtatccaccagagaccgtcctatgtcgctgatgtgctccttgtgccttgcagGCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGTTCGCTGGTCGGCGCGGCGGAGGCGGCGGCTGCTCAACGGGTAAGGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT