1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgtgcctttataactctgcaggtttttaatgatacattttcagatgttctcctttcttaagatttacctttgtacagattttgtgactacctttcctgattgtatgtagGTTAAGGGAGCTGCATATGAAGAACAAAGTTCTTTAAGCCATGGCAAATATGCTTACCCAAAGAATGGTGGTCAAATTTCAAAAGAGTCGTTGAGGCATC
species | Zea mays |
transcript | GRMZM5G886883_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACACTATCCAAACTCAAGTTGTACTACATCTACAAAGACCTATACCCAG GTTAAGGGAGCTGCATATGAAGAACAAAGTTCTTTAAGCCATGGCAAATATEST: gi|89251283|gb|DY623069.1|DY623069
genomic: AACACTATCCAAACTCAAGTTGTACTACATCTACAAAGACCTATACCCAGgtgtgccttt ... ttgtatgtagGTTAAGGGAGCTGCATATGAAGAACAAAGTTCTTTAAGCCATGGCAAATAT
EST: AACACTATCCAAACTCAAGTTGTACTACATCTACAAAGACCTATACCCAG GTTAAGGGAGCTGCATATGAAGAACAAAGTTCTTTAAGCCCTGGGCAA-TA
genomic: AACACTATCCAAACTCAAGTTGTACTACATCTACAAAGACCTATACCCAGgtgtgccttt ... ttgtatgtagGTTAAGGGAGCTGCATATGAAGAACAAAGTTCTTTAAGCCATGG-CAAATA
tcttaagatttacctttgtacagattttgtgactacctttcctgattgtatgtagGTTAAGGGAGCTGCATATGAAGAACAAAGTTCTTTAAGCCATGGCAAATATGCTTACCCAAAGAATGGTGGTCAAATTTCAAAAGAGTCGTTGAGGCATC
tcctgat putative branch site (score: 86)
agattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcctttataactctgcaggtttttaatgatacattttcagatgttctcctttcttaagatttacctttgtacagattttgtgactacctttcctgattgtatgtagGTTAAGGGAGCTGCATATGAAGAACAAAGTTCTTTAAGCCATGGCAAATATGCTTACCCAAAGAATGGTGGTCAAATTTCAAAAGAGTCGTTGAGGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG