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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCAAGCCAGCCCAGCAGCTCCATCTGAAGCCATCATGGACACCACCACACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgtgttccacttcctctctcgtatatacactacatgcgagtctctccaaacacatcagcatccatcatgttttaaccaacgtcaggtcactcttttccag

Basic information

species Zea mays
transcript GRMZM5G882527_T04
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78083553|gb|DV511946.1|DV511946
EST:     CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG                         GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: gi|94480072|gb|EB709030.1|EB709030
EST:     CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG                         GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: gi|86475112|gb|DY241482.1|DY241482
EST:     CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG                         GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: gi|71760000|gb|DR957937.1|DR957937
EST:     CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG                         GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: gi|74243762|gb|DT651676.1|DT651676
EST:     CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG                         GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: gi|78024412|gb|DV492799.1|DV492799
EST:     CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG                         GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG