Sequence
atgc intronic sequence ATGC exonic sequencegtcagattagttacttggattaactatatttgatatactgatatctgcttataagttatagtaggccgtttaagtagtaaactttgagaaggaacaaatgtgcttttttttggacagGTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G882527_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g42470.1 (Oryza sativa), 3'ss of exon 3
------------------------------------------gtcagattagttacttggattaactatatttgatat--actgatatctgcttata-agttatagtagg---ccgtttaagtagta----aactttgagaaggaacaaatgtgcttttttttggacagGTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAG
|| ||| || || ||| ||| ||||| | | | | | || || |||| |||| | | | | | |||||||| ||| ||||| ||||||||| || ||||||||||||||||| || ||| |||||||||| ||||||||||| ||||| |||||||||||||||||
gtaaaaaataagttggttactatttaactattacatgctctagttcaattctttcctctcattt-ttatttttgagagtaattattgttgagttgtacagttgtagtgacatcttgctaatgcatggctctaactttgataagaaacaactgtgcttttctt----cagGTTACTGGAAAGGCTCTCATTTTGGATGAGATCATCAACTATGTACAGTCGTTGCAGAACCAAGTTGAG
upper sequence: GRMZM5G882527_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv17s0000g00430.t01 (Vitis vinifera), 3'ss of exon 3
gtcagattagttacttggattaactatatttgatatactgatatctgcttataagttatagtaggccgtttaagtagtaaactttgagaaggaacaaatgtgcttttttttgga---cagGTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAG
| | ||||| || || || | || | || | | || | | ||| || | |||| ||| ||| | ||||||||||||||||||| || ||||||| || ||||||||||| |||||||| ||||| ||||| |||
-----------------------gtgaagttgattctcttctaaatgataatgacttgttttt-----cctagacaagtatttttctgacactgtca-tgtggtttggcttgaaatatagGTTACTGGAAAGGCCCTTATGTTGGATGAAATAATCAACTATGTCCAGTCCCTACAGAATCAAGTAGAG
upper sequence: GRMZM5G882527_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv01s0244g00010.t01 (Vitis vinifera), 3'ss of exon 3
gtcagattagttacttggattaactatatttgatatactgatatctgcttataagttatagtaggccgtttaagtagtaaactttgagaaggaacaaatgtgcttttttttggacagGTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAG
|| || || ||| ||| ||| | ||| | |||| ||||| || |||| | || | | || ||| | || | |||| || | | ||| ||| | || | ||||||||||| ||||||||||| ||||||||||||| ||||| |||
---------atttttttatttttttat-ttttttatttttttatttttttattttttata-tatat-gtttggaggatgaatatctaacagttacat-tttgttcaatttt----agATCATTGGCAAGACTCTCGTACTGGATGAGATAATCAACTATGTCAAGTCCCTGCAGAATCAAGTAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggccgtttaagtagtaaactttgagaaggaacaaatgtgcttttttttggacagGTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAG
tgctttttttt CT-rich tract
tttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagattagttacttggattaactatatttgatatactgatatctgcttataagttatagtaggccgtttaagtagtaaactttgagaaggaacaaatgtgcttttttttggacagGTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG