1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
species | Zea mays |
transcript | GRMZM5G879882_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|74238195|gb|DT646109.1|DT646109
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|40334982|gb|CK369052.1|CK369052
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|37401035|gb|CF637880.1|CF637880
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|37382133|gb|CF627993.1|CF627993
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|4967240|gb|AI691913.1|AI691913
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|40336088|gb|CK370158.1|CK370158
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGATCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|76286570|gb|DV026138.1|DV026138
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|113703664|gb|EE681168.1|EE681168
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|4966450|gb|AI691306.1|AI691306
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: TAAGGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|120480265|gb|EH210787.1|EH210787
genomic: TAAGGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTTTEST: gi|108954346|gb|EC365109.1|EC365109
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|86474334|gb|DY240704.1|DY240704
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|6540652|gb|AW225314.1|AW225314
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
gtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
atctgat putative branch site (score: 118)
cctgccattttttt putative PPT
atttttttatgta TA-rich tract