1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaatttgggatctttgcatatcattccttgtttcttttaaggtcttagatattagacagagtttcattgaaactaagatcagttggttaccccgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGAGCTGTA
species | Zea mays |
transcript | GRMZM5G879737_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAEST: gi|149104626|gb|EE290075.2|EE290075
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAEST: gi|91869578|gb|EB400446.1|EB400446
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
EST: ATTTCAGTCCCTACCCTAGCAGTGGTGATGGCAAAAATCCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAEST: gi|50328435|gb|CO523561.1|CO523561
genomic: ATTTCAGTCC-TACC-TAGCAGTGGTGATGGCAAAAATC-TAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAEST: gi|211228159|gb|FK958932.1|FK958932
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAEST: gi|71774704|gb|DR972582.1|DR972582
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAEST: gi|148961114|gb|EE011820.2|EE011820
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAEST: gi|78108982|gb|DV527399.1|DV527399
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAEST: gi|148973633|gb|EE024744.2|EE024744
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAEST: gi|50332809|gb|CO527935.1|CO527935
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAEST: gi|28909778|gb|CB331096.1|CB331096
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
EST: GGCATTTCAGTCCTACCTAGCAGTGG-GATGGCAAAAATCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAEST: gi|148955107|gb|EC900621.2|EC900621
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG ATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... cgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAA
gatattagacagagtttcattgaaactaagatcagttggttaccccgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGAGCTGTA
ttacccc CT-rich tract
tttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttgggatctttgcatatcattccttgtttcttttaaggtcttagatattagacagagtttcattgaaactaagatcagttggttaccccgccacacagATTGAAGTGTTATCTGAATAGGAATGCTCTGGTGGATTTGCAGCAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGAGCTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT