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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGACAAGCTAGAGCGACGGACATGGGTCACCAGTAAGCCACGGTCAGGGGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgggatctttgcatatcattccttgtttcttttaaggtcttagatattagacagagtttcattgaaactaagatcagttggttaccccgccacacagattgaagtgttatctgaataggaatgctctggtggatttgcag

Basic information

species Zea mays
transcript GRMZM5G879737_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74233786|gb|DT641700.1|DT641700
EST:     GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG                         CAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGA
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... ggatttgcagCAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGA
EST: gi|74233931|gb|DT641845.1|DT641845
EST:     GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG                         CAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGA
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... ggatttgcagCAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGA
EST: gi|91049503|gb|EB159921.1|EB159921
EST:     GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG                         CAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGA
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... ggatttgcagCAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGA