1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaatttgggatctttgcatatcattccttgtttcttttaaggtcttagatattagacagagtttcattgaaactaagatcagttggttaccccgccacacagattgaagtgttatctgaataggaatgctctggtggatttgcagCAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGAGCTGTAACAGGATGGGTTCGTTATGCTGCGTGGCGGCACGGCCTCATGG
species | Zea mays |
transcript | GRMZM5G879737_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG CAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGAEST: gi|74233931|gb|DT641845.1|DT641845
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... ggatttgcagCAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGA
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG CAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGAEST: gi|91049503|gb|EB159921.1|EB159921
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... ggatttgcagCAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGA
EST: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATG CAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGA
genomic: GGCATTTCAGTCCTACCTAGCAGTGGTGATGGCAAAAATCTAACATAATGgtaaatttgg ... ggatttgcagCAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttgggatctttgcatatcattccttgtttcttttaaggtcttagatattagacagagtttcattgaaactaagatcagttggttaccccgccacacagattgaagtgttatctgaataggaatgctctggtggatttgcagCAAGAAAAACCTTGGAATGAATGTACAAGCCACTTAGGGTGCTGTATTAGAGCTGTAACAGGATGGGTTCGTTATGCTGCGTGGCGGCACGGCCTCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC