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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggctccatcttttttttctgagcgccatctttttaaattttccttaatgactcacattattactgccacttatttttttagGTTGTTGCAAAGACCATCAAATCATGCCTTGATGAACTTCCAGGCTTTCCACGAACACAGATTGGATTCTTAACCTTTGACAGCACCTTGCATTTTCATA

Basic information

species Zea mays
transcript GRMZM5G874869_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G874869_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g04020.1 (Oryza sativa), 3'ss of exon 4
-----------------------------------------------------------gtatggctccatcttttttttctgagcgccatctttttaaa--ttttccttaatgactcacattattac-----tgccactt--atttttttagGTTGTTGCAAAGACCATCAAATCATGCCTTGATGAACTTCCAGGCTTTCCACGAACACAGATTGGATTCTTAACCTTTGACAGCACCTTGCATTTTCATA
                                                           |||   |   || | |  |    | ||  ||| || ||| |  || | |||  |   |   |||   ||          |||  ||| ||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||
gtatgtgctatttgttttgcagtttgatttcaatcacttaggggatcatatttttctctgtaactcataatatgtactagtggtgcagcatattcttataggttatgctttgtagtttggattcaaacaaattcaatgcttgcattctttcagGTTGTTGCAAAGACCATCAAATCATGCCTTGATGACCTCCCAGGGTTTCCACGAACACAGATTGGATTCTTAACTTTTGATAGCACATTGCACTTTCATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctttttaaattttccttaatgactcacattattactgccacttatttttttagGTTGTTGCAAAGACCATCAAATCATGCCTTGATGAACTTCCAGGCTTTCCACGAACACAGATTGGATTCTTAACCTTTGACAGCACCTTGCATTTTCATA
                      gactcac  putative branch site (score: 2)
                                       ccacttattttttt  putative PPT
     tttaaattttccttaa  TA-rich tract