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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgttcatacaatcttcattcagtgctacggctacataattcccttgaaacactctaccatgaattgctttatgaaaacccatgctttcttttactgcagTTCCTGGAGAGTACTTTTGTGGTCTTGATGCTAGTGGCAGAAGGTACGATACTGATCAAAGACCTGAACTCTCTAAGGGAACTGTAGAGTTTGTTGCTCC

Basic information

species Zea mays
transcript GRMZM5G874869_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G874869_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g04020.1 (Oryza sativa), 3'ss of exon 3
ttgttcatacaatcttcattcagtgctacggctacataattcccttgaaacactctaccatgaattgctttatgaaaacccatgc---tttcttttactgcagTTCCTGGAGAGTACTTTTGTGGTCTTGATGCTAGTGGCAGAAGGTACGATACTGATCAAAGACCTGAACTCTCTAAGGGAACTGTAGAGTTTGTTGCTCC
   |||| |  |      | | | | ||  |||   | | | | |   |    | | ||   |||   |||  | ||||  || |   || |||||  | |||||||||||||||| ||||||||  |||||| ||| |||||||| || ||| | |||||||||||||| || ||||||||||| |||||||||||||||||
---ttcacaatactgaactgctgcggtagtgctgagttacttcttaacactgttttgccggtaatcaatttgcgcaaactaattccttttcctttttattcagTTCCTGGAGAGTATTTTTGTGGCATTGATGGTAGCGGCAGAAGATATGATGCAGATCAAAGACCTGAGCTTTCTAAGGGAACAGTAGAGTTTGTTGCTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaacactctaccatgaattgctttatgaaaacccatgctttcttttactgcagTTCCTGGAGAGTACTTTTGTGGTCTTGATGCTAGTGGCAGAAGGTACGATACTGATCAAAGACCTGAACTCTCTAAGGGAACTGTAGAGTTTGTTGCTCC
                                 cccatgctttctttt  CT-rich tract
                       tttatgaaaa  TA-rich tract