Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtccttcatggaaaatgttccatcagtcatggatgaatctacctgatctggttatacgtagccacaactaatttaacggttttttttgtttgacataaagGTGCATTTATTGGTGTCTCATTAGAAGGGAATCTAGTTGCCACACGGATGGATGCTAATCTGCGGTTTTATGGTGACCCATATCTAACAACCAGCGACAT

Basic information

species Zea mays
transcript GRMZM5G872216_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872216_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g17130.1 (Oryza sativa), 3'ss of exon 4
--gtccttcatggaaaatgttccatcagtcatggatgaatctacctgatctggttatacgtagccacaactaattta---acggttt-tttttgtttgacataaagGTGCATTTATTGGTGTCTCATTAGAAGGGAATCTAGTTGCCACACGGATGGATGCTAATCTGCGGTTTTATGGTGACCCATATCTAACAACCAGCGACAT
   || ||    |    ||||||   | |  |  || |    |||     |||  ||  || || | ||||| | |      ||||  ||  || |     |  ||||||||| |||||||| || || ||||||||  | ||||| || || | ||| || |||||||||||||| || ||||| ||||| ||||||||||| ||
gcatctttgtgtgttcttgttcc--taatgtttcataa--tgaccatgcatgg--atgtgtggctataactattctttgtgtggttgattcgtgatgactctgcagGTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAACCCGAAGGGACGCAAATCTGCGGTTTTACGGCGACCCGTATCTGACAACCAGCGATAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78074844|gb|DV503278.1|DV503278
EST:     AGCTGGTGATAAAGGATCAGGAGTTTGCTATACATACAGCTGCAGCAAAG                         GTGCATTTATTGGTGTCTCATTAGAAGGGAATCTAGTTGCCACCCGGATGG
genomic: AGCTGGTGATAAAGGATCAGGAGTTTGCTATACATACAGCTGCAGCAAAGgtaactgttg ... tgacataaagGTGCATTTATTGGTGTCTCATTAGAAGGGAATCTAGTTGCCACACGGATGG
EST: gi|113795039|gb|DW910972.1|DW910972
EST:     CTGGTGATAAAGGATCAGGAGTTTGCTATACATACAGCTGCAGCAAAG                         GTGCATTTATTGGTGTCTCATTAGAAGGGAATCTAGTTGCCACACGG
genomic: CTGGTGATAAAGGATCAGGAGTTTGCTATACATACAGCTGCAGCAAAGgtaactgttg ... tgacataaagGTGCATTTATTGGTGTCTCATTAGAAGGGAATCTAGTTGCCACACGG
EST: gi|71771622|gb|DR969559.1|DR969559
EST:     AGCTGGTGATAAAGGATCAGGAGTTTGCTATACATACAGCTGCAGCAAAG                         GTGCATTTATTGGTGTCTCATTAGAAGGGAATCTAGTTGCCACACGGATGG
genomic: AGCTGGTGATAAAGGATCAGGAGTTTGCTATACATACAGCTGCAGCAAAGgtaactgttg ... tgacataaagGTGCATTTATTGGTGTCTCATTAGAAGGGAATCTAGTTGCCACACGGATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctggttatacgtagccacaactaatttaacggttttttttgtttgacataaagGTGCATTTATTGGTGTCTCATTAGAAGGGAATCTAGTTGCCACACGGATGGATGCTAATCTGCGGTTTTATGGTGACCCATATCTAACAACCAGCGACAT
                                  ttttttttgttt  CT-rich tract
                                  ttttttttgtttga  TA-rich tract