1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgaagcctcatgagttttatgacaatacatatttacgctgattgctctttttgtagatgcattcgggtccatcttatatacttgtctctgcatatacagGTTGGTGGTGAGCTTATGGATTTCATCATAGTGCTTCGTGGCCCAGAAGCTGTCCAAACTTTCTGCAGTCGAATGCATTTTTCACTTGGGGCAGGTGTAA
species | Zea mays |
transcript | GRMZM5G872216_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTCTGCACCATCTGCTATACTTTTTGCTGGTTTTGGATGGGGAGCACAG GTTGGTGGTGAGCTTATGGATTTCATCATAGTGCTTCGTGGCCCAGAAGCTEST: gi|71771622|gb|DR969559.1|DR969559
genomic: GGTCTGCACCATCTGCTATACTTTCTGCTGGTTTTGGATGGGGAGCACAGgtttgtatgg ... gcatatacagGTTGGTGGTGAGCTTATGGATTTCATCATAGTGCTTCGTGGCCCAGAAGCT
EST: GGTCTGCACCATCTGCTATACTTTCTGCTGGTTTTGGATGGGGAGCACAG GTTGGTGGTGAGCTTATGGATTTCATCATAGTGCTTCGTGGCCCAGAAGCT
genomic: GGTCTGCACCATCTGCTATACTTTCTGCTGGTTTTGGATGGGGAGCACAGgtttgtatgg ... gcatatacagGTTGGTGGTGAGCTTATGGATTTCATCATAGTGCTTCGTGGCCCAGAAGCT
ctctttttgtagatgcattcgggtccatcttatatacttgtctctgcatatacagGTTGGTGGTGAGCTTATGGATTTCATCATAGTGCTTCGTGGCCCAGAAGCTGTCCAAACTTTCTGCAGTCGAATGCATTTTTCACTTGGGGCAGGTGTAA
tctctgc CT-rich tract
atcttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagcctcatgagttttatgacaatacatatttacgctgattgctctttttgtagatgcattcgggtccatcttatatacttgtctctgcatatacagGTTGGTGGTGAGCTTATGGATTTCATCATAGTGCTTCGTGGCCCAGAAGCTGTCCAAACTTTCTGCAGTCGAATGCATTTTTCACTTGGGGCAGGTGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG