Sequence
atgc intronic sequence ATGC exonic sequencegtaagacaccgatagtccaatacactggagatccaaagcaggtttacagtttgaaaaaaaaaagttaaatggtgatgtactacttccagGTAGAGACCATCCGTCAAGGTTATCTTTCGAAAAGATCTTCAAACTTGAGAGCCGACTGGAAAAGAAGGTTCTTCGTACTTGATAGTCGAGGAATGCTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G872204_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA05G38550.1 (Glycine max), 3'ss of exon 11
-----------------------------gtaagacaccgatagtccaatacactggagatc--caaagcaggtttacagtttgaaaaaaaaaagttaaatggtgatgtactac-ttccagGTAGAGACCATCCGTCAAGGTTATCTTTCGAAAAGATCTTCAAACTTGAGAGCCGACTGGAAAAGAAGGTTCTTCGTACTTGATAGTCGAGGAATGCTGT
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gtattttagaatttgacgtttccttctttctgagatttatgtattacttcattttaaaacttttcaattctgagttg-agtcctgtccattgccgtttcttcatcgcttgcaaaattttagGTTCAAATCATTCGACAAGGATATCTTTCTAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTGTTGACAGTCGAGGAATGTTGT
upper sequence: GRMZM5G872204_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaagacaccgatagtccaatacactggagatccaaagcaggtttacagtttgaaaaaaaaaagttaaatggtgatgtactacttccagGTAGAGACCATCCGTCAAGGTTATCTTTCGAAAAGATCTTCAAACTTGAGAGCCGACTGGAAAAGAAGGTTCTTCGTACTTGATAGTCGAGGAATGCTGT
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-----------gttgatcaacgtctttaacatatgattga----tacatcttccagagagtactattaacatttct-tggtgctttcagGTGCAAACAATAAGGCAAGGTTATCTCTCTAAACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCT
upper sequence: GRMZM5G872204_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv17s0000g00310.t01 (Vitis vinifera), 3'ss of exon 11
--------------------------------------gtaagacaccgatagtccaatacactggagatccaaagcaggttt---acagtttgaaaaaaaaaagttaaatggtgatgtactact--tccagGTAGAGACCATCCGTCAAGGTTATCTTTCGAAAAGATCTTCAAACTTGAGAGCCGACTGGAAAAGAAGGTTCTTCGTACTTGATAGTCGAGGAATGCTGT
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gtaatggttgagatgaccacctttcctttctagtgactctaggaatctaaatttcttcctttctagcatccctcattcttttttaagcagtattaatttaaatatatgta-gctaagacagcactagtgcagGTTCAAACCATTCGACAAGGATATCTTTCAAAACGTTCCTCAAATTTGAGGGGTGACTGGAAGAGAAGGTTCTTTGTTCTTGATAGCCGAGGCATGTTGT
upper sequence: GRMZM5G872204_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 11
-------------------------------------------------------------gtaagacaccgatagtcca-atacactggagatccaaagcaggtttacagtttgaaaaaaaaaagttaaatggtga-tgtactac----ttccagGTAGAGACCATCCGTCAAGGTTATCTTTCGAAAAGATCTTCAAACTTGAGAGCCGACTGGAAAAGAAGGTTCTTCGTACTTGATAGTCGAGGAATGCTGT
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gtctgaagaagcttataagttattaaggaacttcttttatagatacttatcaaaaaaaaaaaaaaggaacttcttttatagatcctctttattttcttgatgttccttgtatttctagttgttttttgtttccgtgtctgaataacaatatttcagGTTCAAACCATCCGACAAGGTTACCTCTCAAAACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagcaggtttacagtttgaaaaaaaaaagttaaatggtgatgtactacttccagGTAGAGACCATCCGTCAAGGTTATCTTTCGAAAAGATCTTCAAACTTGAGAGCCGACTGGAAAAGAAGGTTCTTCGTACTTGATAGTCGAGGAATGCTGT
ctacttcc CT-rich tract
tttacagtttgaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagacaccgatagtccaatacactggagatccaaagcaggtttacagtttgaaaaaaaaaagttaaatggtgatgtactacttccagGTAGAGACCATCCGTCAAGGTTATCTTTCGAAAAGATCTTCAAACTTGAGAGCCGACTGGAAAAGAAGGTTCTTCGTACTTGATAGTCGAGGAATGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG