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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGCACATGTTAAATGACAGATTACTGAATTTTGTTGACATTGATTTGCATGATGTGAAGgtactggtattattttccattaacaaaaagtcacgaaaatctgcactgagaataattgaatgatatagtgttctgttcaacacattttcag

Basic information

species Zea mays
transcript GRMZM5G872204_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872204_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 5
GTTGAGCACATGTTAAATGACAGATTACTGAATTTTGTTGACATTGATTTGCATGATGTGAAGgtactggtattattttccattaacaaaaagtcacgaaaatctgcactgagaataat-tgaatgatatagtgt-tctgttcaacacattttcag-------
|||||||||||||||||||||||||| ||  | |||||  | |||||||| || || || ||||||||| | || ||| |  |||           | |||      | | |   |||| |   |  | ||   | || |||  |    |    |        
GTTGAGCACATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTACAAGAGGTCAAGgtactgtttttctttgcttttattttttctgttctaaagaaaaaatttattgtaatattttttgtttaccctgtcagttagatgtgtacaaaactgatgt