1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgctagtttatggaatatggaatgcttcatttttgtatgtgtcttttgggaataaaacattgttacattaattttcctaacagtctgttttcttttcagATTTGTGCATTAAGAATATTTTTTATCAGAGTTCACTCGAGGAATGCAAGAATTAGGATAGGTAGATTAGATCTTTTTTATTGGTGTATCCTGAGTTTCC
species | Zea mays |
transcript | GRMZM5G866910_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTATGGTGTTCCACAGAGTGACATGAAACTATTTTCACTTATGCAAAAG ATTTGTGCATTAAGAATATTTTTTATCAGAGTTCACTCGAGGAATGCAAGAEST: gi|61119371|gb|DN560332.1|DN560332
genomic: CTTATGGTGTTCCACAGAGTGACATGAAACTATTTTCACTTATGCAAAAGgtttgataaa ... ttcttttcagATTTGTGCATTAAGAATATTTTTTATCAGAGTTCACTCGAGGAATGCAAGA
EST: CTTATGGTGTTCCACAGAGTGACATGAAACTATTTTCACTTATGCAAAAG ATTTGTGCATTAAGAATATTTTTTATCAGAGTTCAEST: gi|166570193|gb|EG055549.1|EG055549
genomic: CTTATGGTGTTCCACAGAGTGACATGAAACTATTTTCACTTATGCAAAAGgtttgataaa ... ttcttttcagATTTGTGCATTAAGAATATTTTTTATCAGAGTTCA
EST: CTTATGGTGTTCCACAGAGTGACATGAAACTATTTTCACTTATGCAAAAG ATTTGTGCATTAAGAATATTTTTTATCAGAGTTCACTCGAGGAATGCEST: gi|166419794|gb|EG317136.1|EG317136
genomic: CTTATGGTGTTCCACAGAGTGACATGAAACTATTTTCACTTATGCAAAAGgtttgataaa ... ttcttttcagATTTGTGCATTAAGAATATTTTTTATCAGAGTTCACTCGAGGAATGC
EST: CTTATGGTGTTCCACAGAGTGACATGAAACTATTTTCACTTATGCAAAAG ATTTGTGCATTAAGAATATTTTTTATCAGAGTTCACTCGAGGAATGC
genomic: CTTATGGTGTTCCACAGAGTGACATGAAACTATTTTCACTTATGCAAAAGgtttgataaa ... ttcttttcagATTTGTGCATTAAGAATATTTTTTATCAGAGTTCACTCGAGGAATGC
tttgggaataaaacattgttacattaattttcctaacagtctgttttcttttcagATTTGTGCATTAAGAATATTTTTTATCAGAGTTCACTCGAGGAATGCAAGAATTAGGATAGGTAGATTAGATCTTTTTTATTGGTGTATCCTGAGTTTCC
tcctaac putative branch site (score: 4)
tctgttttcttttc putative PPT
aataaaacattgttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctagtttatggaatatggaatgcttcatttttgtatgtgtcttttgggaataaaacattgttacattaattttcctaacagtctgttttcttttcagATTTGTGCATTAAGAATATTTTTTATCAGAGTTCACTCGAGGAATGCAAGAATTAGGATAGGTAGATTAGATCTTTTTTATTGGTGTATCCTGAGTTTCC
ctgctag
- - - - - - - - - - - -tgcttca
- - - - - - - - - - - - - - - - - -gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa