1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttaccatcagttgcttatgatccttcagttcattaacgaacttttaggtggttgtgcttgatcggtggtgttctcaggccttctgttttgtggttgtagGATATCAAGAGGAGGGAAGAGGCACTGAAGAATGGTGCAGATCCACATTTGTTTTTGCATAATTGCTGCCTTAGCTCCACCAATTGTATTTCATGGGAAA
species | Zea mays |
transcript | GRMZM5G866910_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGAAGTCCCGATGCTTCATGCCACCGCGATGGTGGCTGGTTGATCTCC GATATCAAGAGGAGGGAAGAGGCACTGAAGAATGGTGCAGATCCACATTTGEST: gi|101386493|gb|EB815263.1|EB815263
genomic: GCTGAAGTCCCGATGCTTCATGCCACCGCGATGGTGGCTGGTTGATCTCCgtgagtttca ... gtggttgtagGATATCAAGAGGAGGGAAGAGGCACTGAAGAATGGTGCAGATCCACATTTG
EST: GCTGAAGTCCCGATGCTTCATGCCACCGCGATGGTGGCTGGTTGATCTCC GATATCAAGAGGAGGGAAGAGGCACTGAAGAATGGTGCAGATCCACATTTGEST: gi|76016759|gb|DT943929.1|DT943929
genomic: GCTGAAGTCCCGATGCTTCATGCCACCGCGATGGTGGCTGGTTGATCTCCgtgagtttca ... gtggttgtagGATATCAAGAGGAGGGAAGAGGCACTGAAGAATGGTGCAGATCCACATTTG
EST: GCTGAAGTCCCGATGCTTCATGCCACCGCGATGGTGGCTGGTTGATCTCC GATATCAAGAGGAGGGAAGAGGCACTGAAGAATGGTGCAGATCCACATTTG
genomic: GCTGAAGTCCCGATGCTTCATGCCACCGCGATGGTGGCTGGTTGATCTCCgtgagtttca ... gtggttgtagGATATCAAGAGGAGGGAAGAGGCACTGAAGAATGGTGCAGATCCACATTTG
taggtggttgtgcttgatcggtggtgttctcaggccttctgttttgtggttgtagGATATCAAGAGGAGGGAAGAGGCACTGAAGAATGGTGCAGATCCACATTTGTTTTTGCATAATTGCTGCCTTAGCTCCACCAATTGTATTTCATGGGAAA
gcttgat putative branch site (score: 71)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaccatcagttgcttatgatccttcagttcattaacgaacttttaggtggttgtgcttgatcggtggtgttctcaggccttctgttttgtggttgtagGATATCAAGAGGAGGGAAGAGGCACTGAAGAATGGTGCAGATCCACATTTGTTTTTGCATAATTGCTGCCTTAGCTCCACCAATTGTATTTCATGGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - cagttgc
- - - - - - - - - tgatcct
- - - - - - - - - - - - - - - - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggtg