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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatccccctctggattgGTGTAACCGAACATACCCTTAGCTGTTAAAGCATCATGTAGGGATACTTGGTAGATAAACCAAGGTGGTATTGAAAATGCAGTTAGG

Basic information

species Zea mays
transcript GRMZM5G865576_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71759382|gb|DR957319.1|DR957319
EST:     GGATGCAGCCTTCGTAATACAGAATACATTGTTG                         GTGTAACCGAACATACCCTTAGCTGTTAAAGCATCATGTAGGGATACTTGG
genomic: GGATGCAGCCTTCGTAATACAGAATACATTGTTGgtgttgtcat ... ctctggattgGTGTAACCGAACATACCCTTAGCTGTTAAAGCATCATGTAGGGATACTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatccccctctggattgGTGTAACCGAACATACCCTTAGCTGTTAAAGCATCATGTAGGGATACTTGGTAGATAAACCAAGGTGGTATTGAAAATGCAGTTAGG
                                        tccccctct  CT-rich tract