1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctctctctctcatgtgcatcttcctaggtttgagtcaacttgtcattctttgccttttgtcagccttaattttaacttcgcacttgtgcttacagTCCAGTTCATCCTGTCACTAATGTTGTTCCCCTAAGTCTTGTGCTTCTGGTGTCTCTCATCAAGGAAGCTTTTGAGGATTGG
species | Zea mays |
transcript | GRMZM5G865576_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTACTTTTTCATGATCTCAATCATGTCAACTACACCTATCAG TCCAGTTCATCCTGTCACTAATGTTGTTCCCCTAAGTCTTGTGCTTTTGGTEST: gi|71438458|gb|DR819508.1|DR819508
genomic: TTTACTTTCTCATGATCTCAATCATGTCAACTACACCTATCAGgtctctctct ... gtgcttacagTCCAGTTCATCCTGTCACTAATGTTGTTCCCCTAAGTCTTGTGCTTCTGGT
EST: GCAAATCTTTACTTTCTCATGATCTCAATCATGTCAACTACACCTATCAG TCCAGTTCATCCTGTCACTAATGTTGTTCCCCTAAGTCTTGTGCTTCTGGT
genomic: GCAAATCTTTACTTTCTCATGATCTCAATCATGTCAACTACACCTATCAGgtctctctct ... gtgcttacagTCCAGTTCATCCTGTCACTAATGTTGTTCCCCTAAGTCTTGTGCTTCTGGT
tgtcattctttgccttttgtcagccttaattttaacttcgcacttgtgcttacagTCCAGTTCATCCTGTCACTAATGTTGTTCCCCTAAGTCTTGTGCTTCTGGTGTCTCTCATCAAGGAAGCTTTTGAGGATTGG
ttttaac putative branch site (score: 75)
ttaattttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctctctctcatgtgcatcttcctaggtttgagtcaacttgtcattctttgccttttgtcagccttaattttaacttcgcacttgtgcttacagTCCAGTTCATCCTGTCACTAATGTTGTTCCCCTAAGTCTTGTGCTTCTGGTGTCTCTCATCAAGGAAGCTTTTGAGGATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT