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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGTGGAAGGTGATGCTGATGCAAATGATCCAGGGAAAGAATGTGTTATTTGCCTCTCAGAACCAAGGGATACTACTGTCCTCCCATGTAGGCATATGgtaagtatgctggcaatctattcaaggattgcatttttttttgtagaaactaatgctcaatttttgaagtaacttggtataagttttcattatttgacta...

Basic information

species Zea mays
transcript GRMZM5G860152_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G860152_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g15000.1 (Oryza sativa), 5'ss of exon 2
CTCCGTGGAAGGTGATGCTGATGCAAATGATCCAGGGAAAGAATGTGTTATTTGCCTCTCAGAACCAAGGGATACTACTGTCCTCCCATGTAGGCATATGgtaagtatgctggcaatctattcaaggattgcatttttttttgtagaaactaatgctcaatttttgaagtaacttggtataagttttcattatttga--cta--
||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||| |      | |||| |    || ||| |       |||      ||| |||| ||   || |||      | |  | |||  | | | |  | |  
CTCGGTGGAAGGCGATGCTGATGCCAATGATCCTGGGAAAGAATGTGTTATTTGCCTCTCGGAGCCAAGGGATACTACCGTTCTCCCATGTAGGCATATGgtaagtatccgatttgtgtattgactagtt-catgtgcagcattaggggtccatgatcaagtt---aaataaagctacaaagttattctgtttctaaaaccata

upper sequence: GRMZM5G860152_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv08s0040g01940.t01 (Vitis vinifera), 5'ss of exon 2
CTCCGTGGAAGGTGATGCTGATGCAAATGATCCAGGGAAAGAATGTGTTATTTGCCTCTCAGAACCAAGGGATACTACTGTCCTCCCATGTAGGCATATGgtaagtatgctggca-atctattcaaggattgcatttttttttgtagaaactaatgctcaatttttgaagtaacttggta--taagttttcattatttgacta
||| || || ||||||  |||    ||||||||||| |||||||||||||| ||| | || |||||  |||| || |||||||| || ||| | ||||||||||||    |  |   | ||||   ||  ||     | |  |  |   |  ||     ||    | || || |    |   ||  |   || ||||     |
CTCTGTTGATGGTGATTTTGACAGCAATGATCCAGGAAAAGAATGTGTTATCTGCTTGTCGGAACCTCGGGACACAACTGTCCTTCCCTGTCGACATATGgtaagtgcattatcttgtttatttttgggatg---gctgtaataaaatgaggaagcgagaagggctaaaatagcccaatggttagctgcccagtattccttga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60395387|gb|DN228256.1|DN228256
EST:     TTTGCCTCTCAGAACCAAGGGATACTACTGTCCTCCCATGTAGGCATATG                         TGCATGTGCAGTGAGTGCGCCAAGGTCCTGAGGTACCAAACCACTCGGTGC
genomic: TTTGCCTCTCAGAACCAAGGGATACTACTGTCCTCCCATGTAGGCATATGgtaagtatgc ... ttcactacagTGCATGTGCAGTGAGTGCGCCAAGGTCCTGAGGTACCAAACCACTCGGTGC