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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTCAACCTTAAGAAGGAGACGCTTAGGATCGAGCCTGATGAAGAGTGCCCTGGCCACTTCCTCGTTGCCTTCACCTTTGACGCCACGGTCGCTGGCAGgtgattattcactcattcagtccacttaacatcaaacatgttgtattctaatttgtatttcatgtttgcatgtgaatctccttccctggtatctattcca...

Basic information

species Zea mays
transcript GRMZM5G860152_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G860152_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g15000.1 (Oryza sativa), 5'ss of exon 1
ACGTCAACCTTAAGAAGGAGACGCTTAGGATCGAGCCTGATGAAGAGTGCCCTGGCCACTTCCTCGTTGCCTTCACCTTTGACGCCACGGTCGCTGGCAGgtgattattcactcattcagtccacttaacatcaaacatgttgtattctaatt-tgtatttcatg---tttgcatgtgaatctccttccctggtatctattcca
|||||||||| ||||||||||| ||| |||| ||||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||  | ||||| |||||| | ||   |  ||  || || | ||  | |    || | ||||  | || |||     | |   |||||   | | |  | | |    |  |  | |   
ACGTCAACCTCAAGAAGGAGACTCTTCGGATTGAGCCTGATGAGGAGTGCCCGGGCCGCTTCCTCGTCGCCTTCACCTTTGACGCCACCCTTGCTGGAAGgtgaatcttttgttcttttgtacaatcaaactta--tgtgctatatttcatttatgtgccgaaagaattttgctgtttagttgcatacttaagatttcactg--

upper sequence: GRMZM5G860152_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G20270.1 (Glycine max), 5'ss of exon 1
ACGTCAACCTTAAGAAGGAGACGCTTAGGATCGAGCCTGATGAAGAGTGCCCTGGCCACTTCCTCGTTGCCTTCACCTTTGACGCCACGGTCGCTGGCAGgtgattattcactcattcagtccacttaacatcaaaca-tgttgtattctaatttgtatttcatgtttgcatgtgaatctcc--ttccctggtatctattcca
| |||||| | |||||||||||||||||||| ||||||||||| |||   |||||||  ||||| ||  | || || ||||| ||||| ||  | || |||| |     |  |  ||   |||  |||   |   |   |||  ||   ||||| || |||  |||||     | | | |    |  | ||  |   ||   |
ATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGCCGTTTCCTTGTGTCATTTACGTTTGATGCCACCGTTTCGGGGAGgtaaca--ccgtttttttcttccttttattttatgatggtgtaataaggtaatt-gtgttttgtgtttattgattagtgtgtggtgtcgtgtgaatgatggta

upper sequence: GRMZM5G860152_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G05930.1 (Glycine max), 5'ss of exon 1
ACGTCAACCTTAAGAAGGAGACGCTTAGGATCGAGCCTGATGAAGAGTGCCCTGGCCACTTCCTCGTTGCCTTCACCTTTGACGCCACGGTCGCTGGCAGgtgattattcactcattcagt--ccacttaacatcaaacatgttgtattctaatttgtatttcatgt-ttgcatgtgaatctcct--tccctggtatctattcca
| |||||| | |||||||||||||||||||| ||||||||||| |||   ||||||   || |||||  | || || ||||| ||||| ||  | || |||| ||| | |  |  |  | |       |||||    |  | |  | | || |  |||| |    || ||| | |  |||    |  |  ||| | ||       
ATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGCTGTTTTCTCGTGTCGTTTACGTTTGATGCCACCGTTTCGGGAAGgt-attttccttttttgtaatgatggtgtaacaaggtaattatgttttccttaggtgtactcgcggtcttggacgaaaattaattagttactgctttcggc----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60395387|gb|DN228256.1|DN228256
EST:     CCTGGCCACTTCCTCGTTGCCTTCACCTTTGACGCCACGGTCGCTGGCAG                         CATGACTGTTTACTTGTTTGCAAAGGAAGAGCTCAACTGCAATCTAACAGC
genomic: CCTGGCCACTTCCTCGTTGCCTTCACCTTTGACGCCACGGTCGCTGGCAGgtgattattc ... ccttgaacagCATGACTGTTTACTTGTTTGCAAAGGAAGAGCTCAACTGCAATCTAACAGC