1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taatttgctgatgaaacatgtggctcttgcttcgtgaatccttcctttatggcctcatctgccgtcactatcttgtttattgatgtgtggcatcctgcagGGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCGTGTCATCCGGGTCCAACTTGGCGGAAGGGACAGACGTGTCGTGAAGCAA
species | Zea mays |
transcript | GRMZM5G856653_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGG GGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCGEST: gi|211440489|gb|FL452484.1|FL452484
genomic: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGGgtaaggccag ... catcctgcagGGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCG
EST: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGG GGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCGEST: gi|148957702|gb|EC903823.2|EC903823
genomic: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGGgtaaggccag ... catcctgcagGGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCG
EST: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGG GGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCGEST: gi|6021133|gb|AW066061.1|AW066061
genomic: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGGgtaaggccag ... catcctgcagGGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCG
EST: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGG NGATGAACATGGTCTGTTTTATGCACTGGACCTGGGCGGGACCAACTTTCGEST: gi|148980000|gb|EE026913.2|EE026913
genomic: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGGgtaaggccag ... catcctgcagGGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCG
EST: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGG GGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCGEST: gi|148933666|gb|EC877560.2|EC877560
genomic: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGGgtaaggccag ... catcctgcagGGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCG
EST: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGG GGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCG
genomic: CACGCGCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCAACCGGgtaaggccag ... catcctgcagGGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCG
tttatggcctcatctgccgtcactatcttgtttattgatgtgtggcatcctgcagGGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCGTGTCATCCGGGTCCAACTTGGCGGAAGGGACAGACGTGTCGTGAAGCAA
tattgat putative branch site (score: 124)
ttgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatttgctgatgaaacatgtggctcttgcttcgtgaatccttcctttatggcctcatctgccgtcactatcttgtttattgatgtgtggcatcctgcagGGATGAACATGGTCTGTTTTATGCACTGGACCTTGGCGGGACCAACTTTCGTGTCATCCGGGTCCAACTTGGCGGAAGGGACAGACGTGTCGTGAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - gctgatg
- - - - - - - - catgtgg
- - - - - - - - - - - -ctcttgc
- - - - - - - - - - - - - - - - -gtgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgatg