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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTAGGCGAGACGTTCATGGGTTAGATCTGGCGGTCCGGCGGCGCGGATCTGAGCGAGgtaggctgtcgcattttttgccccctcgggcgtctgtttccatttccttgcagttgcctgcagttggcaggagctgaaggctacccaatctctctctgcag

Basic information

species Zea mays
transcript GRMZM5G848945_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78092940|gb|DV521314.1|DV521314
EST:     AGACGTTCATGGGTTAGATCTGGCGGTCCGGCGGCGCGGATCTGAGCGAG                         GTTTCGGTGGAGAGATCGGGTGGTGGTCACTATCTTCGCCTCATTTCGAGT
genomic: AGACGTTCATGGGTTAGATCTGGCGGTCCGGCGGCGCGGATCTGAGCGAGgtaggctgtc ... ctctctgcagGTTTCGGTGGAGAGATCGGGTGGTGGTCACTATCTTCGCCTCATTTCGAGT
EST: gi|18385001|gb|BM418200.1|BM418200
EST:     AGACGTTCATGGGTTAGATCTGGCGGTCCGGCGGCGCGGATCTGAGCGAG                         GTTTCGGTGGAGGGATCGGGTGGTGGTCACTATCTTCGCCTCATTTCGAGT
genomic: AGACGTTCATGGGTTAGATCTGGCGGTCCGGCGGCGCGGATCTGAGCGAGgtaggctgtc ... ctctctgcagGTTTCGGTGGAGAGATCGGGTGGTGGTCACTATCTTCGCCTCATTTCGAGT