1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggctgtcgcattttttgccccctcgggcgtctgtttccatttccttgcagttgcctgcagttggcaggagctgaaggctacccaatctctctctgcagGTTTCGGTGGAGAGATCGGGTGGTGGTCACTATCTTCGCCTCATTTCGAGTAGATGGAGCGTCTCATGGCCAAATCGGGCATGTATGGCGGATTCTGCTA
species | Zea mays |
transcript | GRMZM5G848945_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACGTTCATGGGTTAGATCTGGCGGTCCGGCGGCGCGGATCTGAGCGAG GTTTCGGTGGAGAGATCGGGTGGTGGTCACTATCTTCGCCTCATTTCGAGTEST: gi|18385001|gb|BM418200.1|BM418200
genomic: AGACGTTCATGGGTTAGATCTGGCGGTCCGGCGGCGCGGATCTGAGCGAGgtaggctgtc ... ctctctgcagGTTTCGGTGGAGAGATCGGGTGGTGGTCACTATCTTCGCCTCATTTCGAGT
EST: AGACGTTCATGGGTTAGATCTGGCGGTCCGGCGGCGCGGATCTGAGCGAG GTTTCGGTGGAGGGATCGGGTGGTGGTCACTATCTTCGCCTCATTTCGAGT
genomic: AGACGTTCATGGGTTAGATCTGGCGGTCCGGCGGCGCGGATCTGAGCGAGgtaggctgtc ... ctctctgcagGTTTCGGTGGAGAGATCGGGTGGTGGTCACTATCTTCGCCTCATTTCGAGT
cttgcagttgcctgcagttggcaggagctgaaggctacccaatctctctctgcagGTTTCGGTGGAGAGATCGGGTGGTGGTCACTATCTTCGCCTCATTTCGAGTAGATGGAGCGTCTCATGGCCAAATCGGGCATGTATGGCGGATTCTGCTA
cccaatctctctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggctgtcgcattttttgccccctcgggcgtctgtttccatttccttgcagttgcctgcagttggcaggagctgaaggctacccaatctctctctgcagGTTTCGGTGGAGAGATCGGGTGGTGGTCACTATCTTCGCCTCATTTCGAGTAGATGGAGCGTCTCATGGCCAAATCGGGCATGTATGGCGGATTCTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA