1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTCTACGACGGCGAGACCGGCCGCTCCAGGGGCTACGGCTTCGTCTGCTACTCCACCAGGGAGGAGATGGACGAGGCGCTTTCCTCGCTCAACGGAATGgtacgtaggcattgatgaatctaacctgcggaacgcgtcgatcgggctgaatgctaacaccacgcgcaatgcag
species | Zea mays |
transcript | GRMZM5G841101_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTCCACCAGGGAGGAGATGGACGAGGCGCTTTCCTCGCTCAACGGAATG GAAATGGAAGGCAGGGAGATGAGGGTCAACTTGGCCCTCGGAAAGAAGTAAEST: gi|148966268|gb|EE017230.2|EE017230
genomic: ACTCCACCAGGGAGGAGATGGACGAGGCGCTTTCCTCGCTCAACGGAATGgtacgtaggc ... cgcaatgcagGAAATGGAAGGCAGGGAGATGAGGGTCAACTTGGCCCTCGGAAAGAAGTAA
EST: ACTCCACCAGGGAGGAGATGGACGAGGCGCTTTCCTCGCTCAACGGAATG GAAATGGAAGGCAGGGAGATGAGGGTCAACTTGGCCCTCGGAAAGAAGTAAEST: gi|148954242|gb|EC899648.2|EC899648
genomic: ACTCCACCAGGGAGGAGATGGACGAGGCGCTTTCCTCGCTCAACGGAATGgtacgtaggc ... cgcaatgcagGAAATGGAAGGCAGGGAGATGAGGGTCAACTTGGCCCTCGGAAAGAAGTAA
EST: ACTCCACCAGGGAGGAGATGGACGAGGCGCTTTCCTCGCTCAACGGAATG GAAATGGAAGGCAGGGAGATGAGGGTCAACTTGGCCCTCGGAAAGAAGTAA
genomic: ACTCCACCAGGGAGGAGATGGACGAGGCGCTTTCCTCGCTCAACGGAATGgtacgtaggc ... cgcaatgcagGAAATGGAAGGCAGGGAGATGAGGGTCAACTTGGCCCTCGGAAAGAAGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTACGACGGCGAGACCGGCCGCTCCAGGGGCTACGGCTTCGTCTGCTACTCCACCAGGGAGGAGATGGACGAGGCGCTTTCCTCGCTCAACGGAATGgtacgtaggcattgatgaatctaacctgcggaacgcgtcgatcgggctgaatgctaacaccacgcgcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA