1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtagtgtcatcatacactcacactgatgcaagccacaccacacgcgcgcgcgcattaacggtactgtggtccgtcctccgatcgatcgacgaccagCTGTACGGTGGCCGGACGATGAAGGTGAACTTCGCCGACCGGCCCAAGCCCAAGCAGGCGCTGTACCCGGAGACGGAGCACAAGCTGTTCGTCGGCAACC
species | Zea mays |
transcript | GRMZM5G841101_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGACCACGGTTCAGGACTGCGAGTTGGTCATCAAGAACCTCGACGGCAGC CTGTACGGTGGCCGGACGATGAAGGTGAACTTCGCCGACCGGCCCAAGCCCEST: gi|148966269|gb|EE017231.2|EE017231
genomic: TGACCACGGTTCAGGACTGCGAGTTGGTCATCAAGAACCTCGACGGCAGCgtaagtagtg ... cgacgaccagCTGTACGGTGGCCGGACGATGAAGGTGAACTTCGCCGACCGGCCCAAGCCC
EST: TGACCACGGTTCAGGACTGCGAGTTGGTCATCAAGAACCTCGACGGCAGC CTGTACGGTGGCCGGACGATGAAGGTGAACTTCGCCGACCGGCCCAAGCCCEST: gi|71319612|gb|DR796564.1|DR796564
genomic: TGACCACGGTTCAGGACTGCGAGTTGGTCATCAAGAACCTCGACGGCAGCgtaagtagtg ... cgacgaccagCTGTACGGTGGCCGGACGATGAAGGTGAACTTCGCCGACCGGCCCAAGCCC
EST: TGACCACGGTTCACGACTGCGAGTTGGTCATCAAGAACCTCGACGGCAGC CTGTACGGTGGCCGGACGATGAAGGTGAACTTCGCCGACCGGCCCAAGCCCEST: gi|76289407|gb|DV028975.1|DV028975
genomic: TGACCACGGTTCAGGACTGCGAGTTGGTCATCAAGAACCTCGACGGCAGCgtaagtagtg ... cgacgaccagCTGTACGGTGGCCGGACGATGAAGGTGAACTTCGCCGACCGGCCCAAGCCC
EST: TGACCACGGTTCAGGACTGCGAGTTGGTCATCAAGAACCTCGACGGCAGC CTGTACGGTGGCCGGACGATGAAGGTGAACTTCGCCGACCGGCCCAAGCCC
genomic: TGACCACGGTTCAGGACTGCGAGTTGGTCATCAAGAACCTCGACGGCAGCgtaagtagtg ... cgacgaccagCTGTACGGTGGCCGGACGATGAAGGTGAACTTCGCCGACCGGCCCAAGCCC
acgcgcgcgcgcattaacggtactgtggtccgtcctccgatcgatcgacgaccagCTGTACGGTGGCCGGACGATGAAGGTGAACTTCGCCGACCGGCCCAAGCCCAAGCAGGCGCTGTACCCGGAGACGGAGCACAAGCTGTTCGTCGGCAACC
cattaac putative branch site (score: 2)
attaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagtgtcatcatacactcacactgatgcaagccacaccacacgcgcgcgcgcattaacggtactgtggtccgtcctccgatcgatcgacgaccagCTGTACGGTGGCCGGACGATGAAGGTGAACTTCGCCGACCGGCCCAAGCCCAAGCAGGCGCTGTACCCGGAGACGGAGCACAAGCTGTTCGTCGGCAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT