1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcatccctcgtcatgacaattgatctcgtcttggcatgcatttgcagtgagccgatgaacaagtgatcgagtgacttcactcgttcgtggatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCACAGAGAGGAGGTCGAGGAGGAAGTGGGGGACGACACGAACATCCTGTTC
species | Zea mays |
transcript | GRMZM5G838196_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAG CTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCAEST: gi|148962266|gb|EE013089.2|EE013089
genomic: TGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
EST: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAG CTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCAEST: gi|13557980|gb|BG549336.1|BG549336
genomic: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
EST: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAG CTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCAEST: gi|211164012|gb|FL463865.1|FL463865
genomic: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
EST: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAG CTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCAEST: gi|149044464|gb|EE047586.2|EE047586
genomic: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
EST: GACTGCCTTCTTCTCCTCGAGCACTGGGCTCAGATAGTCAAGGAGATCAG CTCTGGCGACAAGGGGCTCEST: gi|148979823|gb|EE026840.2|EE026840
genomic: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTC
EST: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAG CTCTGGCGACAAGGGGCTCAAGCCTCTGEST: gi|211467384|gb|FL438565.1|FL438565
genomic: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTG
EST: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAG CTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
genomic: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatccctcgtcatgacaattgatctcgtcttggcatgcatttgcagtgagccgatgaacaagtgatcgagtgacttcactcgttcgtggatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCACAGAGAGGAGGTCGAGGAGGAAGTGGGGGACGACACGAACATCCTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA