1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atcggccactgccgttgccctccatttgcacaaccatttgtgtctattgcccaccaatctctctagtttttcaattgcgatcgatgtatactattggcagGTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCGGCAGCCGACGCAGCCGCTGCGGGTGTCCATCTCCAAGAAGCTACGGGCG
species | Zea mays |
transcript | GRMZM5G838196_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGATGTTCAAGGCGCCGACCAACAACCTCGCCGACGGCGGCTACCACAT GTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCGEST: gi|148956602|gb|EC902450.2|EC902450
genomic: GAGATGTTCAAGGCGCCGACCAACAACCTCGCCGACGGCGGCTACCACATgtgagatgcc ... ctattggcagGTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCG
EST: GAGATGTTCAAGGCGCCGACCAACAACCTCGCCGACGGCGGCTACCACAT GTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCGEST: gi|148979823|gb|EE026840.2|EE026840
genomic: GAGATGTTCAAGGCGCCGACCAACAACCTCGCCGACGGCGGCTACCACATgtgagatgcc ... ctattggcagGTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCG
EST: GAGATGTTCAAGGCGCCGACCAACAACCTCGCCGACGGCGGCTACCACAT GTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCGEST: gi|148962265|gb|EE013088.2|EE013088
genomic: GAGATGTTCAAGGCGCCGACCAACAACCTCGCCGACGGCGGCTACCACATgtgagatgcc ... ctattggcagGTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCG
EST: GAGATGTTCAAGGCGCCGACCAACAACCTCGCCGACGGCGGCTACCACAT GTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCGEST: gi|211467384|gb|FL438565.1|FL438565
genomic: GAGATGTTCAAGGCGCCGACCAACAACCTCGCCGACGGCGGCTACCACATgtgagatgcc ... ctattggcagGTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCG
EST: GCGGCTACCACAT GTACAAGGACATGCT-GAGTGGATTGGGCGCCCGGCGAAGAACGTGCCCCG
genomic: GCGGCTACCACATgtgagatgcc ... ctattggcagGTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCG
attgcccaccaatctctctagtttttcaattgcgatcgatgtatactattggcagGTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCGGCAGCCGACGCAGCCGCTGCGGGTGTCCATCTCCAAGAAGCTACGGGCG
tttttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcggccactgccgttgccctccatttgcacaaccatttgtgtctattgcccaccaatctctctagtttttcaattgcgatcgatgtatactattggcagGTACAAGGACATGCTGGAGTGGATTGGGCGGCCGGCGAAGAACGTGCCCCGGCAGCCGACGCAGCCGCTGCGGGTGTCCATCTCCAAGAAGCTACGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - -actgccg
- - - - - - - - -ccctcca
- - - - - - - - - - - - - - cacaacc
- - - - - - - - - - - - - - - - - - - - - -ctattgc
- - - - - - - - - - - - - - - - - - - - - - - - - ccaccaa