1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGCTATACAGTATACAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAGgtcagatataaattttccttgatgccatatatatgataaatatatggtatcacttccaattaggtgctatttctgtttgaaacactatggctttataatg...
species | Zea mays |
transcript | GRMZM5G830874_T05 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAG ATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAATEST: gi|20208417|gb|BQ134506.1|BQ134506
genomic: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAGgtcagatata ... ttcccaacagATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAAT
EST: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAG ATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAATEST: gi|211046341|gb|FL092969.1|FL092969
genomic: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAGgtcagatata ... ttcccaacagATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAAT
EST: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAG ATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAATEST: gi|78124910|gb|DV543294.1|DV543294
genomic: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAGgtcagatata ... ttcccaacagATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAAT
EST: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAG ATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAATEST: gi|71418229|gb|DR804377.1|DR804377
genomic: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAGgtcagatata ... ttcccaacagATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAAT
EST: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAG ATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAATEST: gi|78110728|gb|DV529126.1|DV529126
genomic: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAGgtcagatata ... ttcccaacagATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAAT
EST: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAG ATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAATEST: gi|78543868|gb|DV621366.1|DV621366
genomic: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAGgtcagatata ... ttcccaacagATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAAT
EST: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAG ATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAATEST: gi|60400536|gb|DN233343.1|DN233343
genomic: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAGgtcagatata ... ttcccaacagATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAAT
EST: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAG ATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAATEST: gi|211376348|gb|FL146641.1|FL146641
genomic: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAGgtcagatata ... ttcccaacagATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAAT
EST: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAG ATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAAT
genomic: CAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAGgtcagatata ... ttcccaacagATTACAAACACCACAATTGCAAGGCCTCATCCAGGAGCAAAATCCCCCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCTATACAGTATACAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACAACATATCGACAAAGgtcagatataaattttccttgatgccatatatatgataaatatatggtatcacttccaattaggtgctatttctgtttgaaacactatggctttataatg
- - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - GGAGAA