1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGTCCAAATGCTGCTCCATGGGTGAAGACTCTAAGGAATGGGGGACATTATAACACAAGCATAAGGGATGCCAGTCAGTACAATGGAGATTCTAGCATTGgtatggtgatggtttgtgattttttcatgtggtcctttgagcctaagattttttcttaaaatttcag
species | Zea mays |
transcript | GRMZM5G830874_T05 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTACAATGGAGATTCTAGCATTG GAGCTTCATTGCACAACCTTACTGATGCATATCATGGAAGCAGGCGCAGCTEST: gi|6952374|gb|AW424442.1|AW424442
genomic: GTACAATGGAGATTCTAGCATTGgtatggtgat ... aaaatttcagGAGCTTCATTGCACAACCTTACTGATGCATATCATGGAAGCAGGCGCAGCT
EST: TAACACAAGCATAAGGGATGCCAGTCAGTACAATGGAGATTCTAGCATTG GAGCTTCATTGCACAACCTTACTGATGCATATCATGGAAGCAGGCGCAGCT
genomic: TAACACAAGCATAAGGGATGCCAGTCAGTACAATGGAGATTCTAGCATTGgtatggtgat ... aaaatttcagGAGCTTCATTGCACAACCTTACTGATGCATATCATGGAAGCAGGCGCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCCAAATGCTGCTCCATGGGTGAAGACTCTAAGGAATGGGGGACATTATAACACAAGCATAAGGGATGCCAGTCAGTACAATGGAGATTCTAGCATTGgtatggtgatggtttgtgattttttcatgtggtcctttgagcctaagattttttcttaaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT