1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcatgtggtgtggcgaggccaaagagccccgagcagattccttgtgtaacatttcggaagacgcctactgattgccctgtcgttccgtgttcagGTTGTCTTCGAGCACGCCAACGACAGGCCCATCATCTTCTCCAGCTTCCAACCCGATGCCGCGCAGCTCATCCGCAAGCTGCAAGACAAATACCCT
species | Zea mays |
transcript | GRMZM5G829946_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTACACGGAGGAGAGGCTTACCTGCATCCTAAAATCCGTTCTCAAG GTTGTCTTCGAGCACGCCAACGACAGGCCCATCATCTTCTCCAGCTTCCAAEST: gi|71429646|gb|DR810696.1|DR810696
genomic: TCTTCTACACGGAGGAGAGGCTTACCTGCATCCTAAAATCCGTTCTCAAGgcatgtggtg ... ccgtgttcagGTTGTCTTCGAGCACGCCAACGACAGGCCCATCATCTTCTCCAGCTTCCAA
EST: TTTTCTACACGGAGGAGAGGCTTACCTGCATCCTAAAATCCGTTCTCAAG GTTGTCTTCGAGCACGCCAACGACAGGCCCATCATCTTCTCCAGCTTCCAAEST: gi|31349103|gb|CD433460.1|CD433460
genomic: TCTTCTACACGGAGGAGAGGCTTACCTGCATCCTAAAATCCGTTCTCAAGgcatgtggtg ... ccgtgttcagGTTGTCTTCGAGCACGCCAACGACAGGCCCATCATCTTCTCCAGCTTCCAA
EST: TCTTCTACACGTAGGAGAGGCTTACCTGCATCCTAAAATCCGTTCTCAAG GTTGTCTTCGAGCACGCCAACGACAGGCCCATCATCNNNNNNNGCTTCCAAEST: gi|148964440|gb|EE015554.2|EE015554
genomic: TCTTCTACACGGAGGAGAGGCTTACCTGCATCCTAAAATCCGTTCTCAAGgcatgtggtg ... ccgtgttcagGTTGTCTTCGAGCACGCCAACGACAGGCCCATCATCTTCTCCAGCTTCCAA
EST: AAAATCCGTTCTCAAG GTGGTCTTGGAGCACGCCAACGACAGGCCCATCATCTTCTCCAGCTTCCAAEST: gi|31361078|gb|CD445435.1|CD445435
genomic: AAAATCCGTTCTCAAGgcatgtggtg ... ccgtgttcagGTTGTCTTCGAGCACGCCAACGACAGGCCCATCATCTTCTCCAGCTTCCAA
EST: TCTTCTACACGGAGGAGAGGCTTACCTGCATCCTAAAATCCGTTCTCAAG GGTGTCTTCGAGCACGCCAACGACAGGCCCATGATGTTCTCCAGCTTCCAA
genomic: TCTTCTACACGGAGGAGAGGCTTACCTGCATCCTAAAATCCGTTCTCAAGgcatgtggtg ... ccgtgttcagGTTGTCTTCGAGCACGCCAACGACAGGCCCATCATCTTCTCCAGCTTCCAA
ccttgtgtaacatttcggaagacgcctactgattgccctgtcgttccgtgttcagGTTGTCTTCGAGCACGCCAACGACAGGCCCATCATCTTCTCCAGCTTCCAACCCGATGCCGCGCAGCTCATCCGCAAGCTGCAAGACAAATACCCT
tactgat putative branch site (score: 2)
tcgttcc putative PPT
taacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtggtgtggcgaggccaaagagccccgagcagattccttgtgtaacatttcggaagacgcctactgattgccctgtcgttccgtgttcagGTTGTCTTCGAGCACGCCAACGACAGGCCCATCATCTTCTCCAGCTTCCAACCCGATGCCGCGCAGCTCATCCGCAAGCTGCAAGACAAATACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA