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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGCGGCTGCGCGGCGACATCAGGGAGAACACCCTCCGCGCCTTCAACGCCGCCGCCGCCAGCCACCCCGCCGTCGCCTACGTCGAGTTCGACGTCCAGgtaaaccatggtctctcctttttttttttatttgccaccaaaatcaatcagtgcattagaaatttgagaatgccggcatgcgccacctctgtctctgtgc...

Basic information

species Zea mays
transcript GRMZM5G829946_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G829946_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g32320.1 (Oryza sativa), 5'ss of exon 2
------CCCGCGGCTGCGCGGCGACATCAGGGAGAACACCCTCCGCGCCTTCAACGCCGCCGCCGCCAGCCACCCCGCCGTCGCCTACGTCGAGTTCGACGTCCAGgtaaaccatggtc-tctcctttttttttttatttgccaccaaaatcaatcagtgc-attagaaatttgagaatgccggcatgcgccacctctgtctctgtgc
      ||||||||||    | ||  | | ||| ||| | |||||| ||||| |||||||||||    ||  | ||| |||| ||||||||||||||||||||||||| ||  |      |||| ||| ||  || ||| |  | |    || || | | | | ||| |       |||      ||     ||   ||  |      
GGCGGACCCGCGGCTG---AGGGAGGTGAAGGAAAACTCGCTCCGCTCCTTCCACGCCGCCGCCC---GCGTCGCCGGCGTCTCCTACGTCGAGTTCGACGTCCAGgtcaattaaatcaatctcatttattaattaattcgttaacctcctcgattaatcccagtagtagcgaataaatcatactata-attacacgtgaatgaaga-