1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
GTATGTTGAAAACAACCCGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgactactagtgatctaatagctacattcataggcatgaagaatcaaagtatgtaacctgataatcatttggtacttcatatgcag
species | Zea mays |
transcript | GRMZM5G825854_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTEST: gi|211066409|gb|FL073783.1|FL073783
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
EST: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTEST: gi|18450702|gb|BM428980.1|BM428980
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
EST: GCAATATGCTGAATCTGCTNGTT-ATTTGGTCAAATTTCGCCAACTTCAA TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTEST: gi|148952057|gb|EC897846.2|EC897846
genomic: GCAATATGCTGAATCTGCT-GTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
EST: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGEST: gi|91872014|gb|EB401971.1|EB401971
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAG
EST: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTEST: gi|87153442|gb|DY398231.1|DY398231
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
EST: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTEST: gi|32859413|gb|CD999094.1|CD999094
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
EST: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGTTGAAAACAACCCGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgactactagtgatctaatagctacattcataggcatgaagaatcaaagtatgtaacctgataatcatttggtacttcatatgcag
- - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - GCTGTT