1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
AAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCTGCTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGgtttgttttcattcttatgttccttgacttttgcttaatgtctgcattactactcatatctagcattggcaatggaattttaaaattattattttctttcctgtag
species | Zea mays |
transcript | GRMZM5G825854_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAG TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGEST: gi|93281267|gb|EB673531.1|EB673531
genomic: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGgtttgttttc ... tttcctgtagTTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG
EST: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAG TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGEST: gi|211087678|gb|FL052575.1|FL052575
genomic: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGgtttgttttc ... tttcctgtagTTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG
EST: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAG TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGEST: gi|149104241|gb|EE289677.2|EE289677
genomic: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGgtttgttttc ... tttcctgtagTTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG
EST: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAG TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGEST: gi|211087686|gb|FL052583.1|FL052583
genomic: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGgtttgttttc ... tttcctgtagTTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG
EST: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAG TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGEST: gi|148952057|gb|EC897846.2|EC897846
genomic: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGgtttgttttc ... tttcctgtagTTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG
EST: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAG TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGEST: gi|91872014|gb|EB401971.1|EB401971
genomic: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGgtttgttttc ... tttcctgtagTTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG
EST: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAG TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGEST: gi|211087681|gb|FL052578.1|FL052578
genomic: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGgtttgttttc ... tttcctgtagTTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG
EST: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAG TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG
genomic: CTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGgtttgttttc ... tttcctgtagTTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCTGCTTTGGAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGgtttgttttcattcttatgttccttgacttttgcttaatgtctgcattactactcatatctagcattggcaatggaattttaaaattattattttctttcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG